High Protein Baked Mac and Cheese Recipe

Craving a bowl of comforting mac and cheese but don’t want to derail your protein goals? This High Protein Baked Mac and Cheese hits the spot. It’s creamy, cheesy, and satisfying while packing over 30 grams of protein per serving. With smart swaps like chickpea pasta, cottage cheese, and Greek yogurt, this version fuels your body without loading you with excess fat or empty carbs.

Whether you’re meal-prepping for the week or looking for a guilt-free comfort meal, this recipe gives you all the flavor without the regret.

Healthy High Protein Baked Mac and Cheese with golden topping and creamy sauce

Why You’ll Love This Recipe

Unlike traditional mac and cheese, this protein-packed version nourishes your body and supports your fitness goals. The sauce blends low-fat dairy for creaminess and protein without the heaviness. Chickpea or lentil pasta delivers complex carbs and extra plant-based protein. Even better, baking the dish adds a crispy top layer that makes every bite deliciously satisfying.

Let’s dive into the details so you can whip this up today.

Ingredients (Serves 4)

For the Pasta and Sauce:

  • 8 ounces chickpea or lentil pasta (like Banza or Barilla Protein+)
  • 1 cup low-fat cottage cheese
  • ¾ cup plain Greek yogurt (2% or 0%)
  • ½ cup unsweetened almond milk (or milk of choice)
  • 1 cup reduced-fat shredded cheddar cheese
  • ¼ cup grated Parmesan cheese
  • 1 tablespoon arrowroot powder or cornstarch
  • 1 teaspoon garlic powder
  • ½ teaspoon smoked paprika
  • Salt and black pepper to taste

For the Baked Topping (Optional but Recommended):

  • ¼ cup whole wheat or panko breadcrumbs
  • Olive oil spray
  • Extra paprika for topping

Step-by-Step Instructions

1. Preheat and Prepare

Start by preheating your oven to 400°F (200°C). Lightly grease an 8×8-inch baking dish with olive oil or cooking spray. Set it aside while you prepare the pasta and sauce.

2. Cook the Pasta

Bring a pot of salted water to a boil. Add the chickpea pasta and cook it just until al dente—about 1 to 2 minutes less than the package recommends. This ensures it won’t turn mushy when baked. Drain and set the pasta aside.

Chickpea pasta cooking in boiling water until al dente

3. Make the High-Protein Cheese Sauce

Grab a blender or food processor. Add the cottage cheese, Greek yogurt, almond milk, arrowroot powder, garlic powder, paprika, salt, and pepper. Blend until the mixture turns completely smooth and creamy. This creates your high-protein base.

Next, pour the blended mixture into a medium saucepan and place it over medium heat. Stir continuously for 3–5 minutes until the sauce begins to thicken. Once it does, reduce the heat to low and stir in the shredded cheddar and Parmesan. Keep stirring until all the cheese melts and the sauce becomes silky and thick.

Blending Greek yogurt and cottage cheese sauce for healthy mac and cheese
High protein cheese sauce with melted cheddar in saucepan

4. Combine Pasta and Sauce

Now transfer the drained pasta into a large mixing bowl. Pour the warm cheese sauce over the pasta and stir everything together until well coated.

Combining cooked pasta and protein cheese sauce

5. Assemble and Bake

Scoop the mac and cheese mixture into your prepared baking dish. Smooth it out evenly. If you’re using breadcrumbs, sprinkle them evenly over the top. Then give the top a light spray of olive oil and a dusting of paprika for color.

Bake the dish uncovered for 15–20 minutes, or until the top turns golden brown and crisp.

Baked mac and cheese topped with whole wheat breadcrumbs before baking

6. Cool and Serve

Remove from the oven and let it cool for 5 minutes before serving. This helps the sauce set and intensifies the flavor. Garnish with chopped parsley or red pepper flakes if you’d like a pop of color and heat.

Meal Prep Tips

This baked mac and cheese holds up beautifully in the fridge for up to four days. Store it in airtight glass containers for easy meal prep. When you’re ready to reheat, warm it in the oven at 350°F for 10 minutes or microwave with a splash of almond milk to keep it creamy.

You can also double the batch and freeze half. Just make sure to use a freezer-safe container and let it cool completely before freezing. It reheats best when thawed overnight in the fridge and baked again until bubbly.

Boost the Nutrition (Optional Add-Ins)

Want to level it up even more? Try adding:

  • Shredded rotisserie chicken for extra lean protein
  • Steamed broccoli or spinach for added fiber and micronutrients
  • Chopped turkey bacon for a smoky bite

These add-ins give you variety and flexibility while keeping your macros strong.

Nutrition Facts (Per Serving)

NutrientAmount
Calories390 kcal
Protein33 g
Carbohydrates32 g
Dietary Fiber5 g
Sugars3 g
Total Fat15 g
Saturated Fat6 g
Cholesterol35 mg
Sodium480 mg

Based on 4 servings. Nutrition may vary slightly depending on the specific ingredients used.

Final Thoughts

With this High Protein Baked Mac and Cheese, you never have to choose between comfort food and clean eating. It’s a smart, muscle-friendly meal that satisfies your cravings and fuels your goals. Plus, it’s easy to prepare, easy to customize, and guaranteed to be a crowd-pleaser at the dinner table or in your weekly meal prep.

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